RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g17070.1 View Network Show in Genome Browser |
| Other Names | Os03g0278900 |
| Description | ATP synthase B chain, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 9491414-9492494 Nucleotide Length: 636 |
| Protein-coding | LOC_Os03g17070 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g08350 LOC_Os02g51470 LOC_Os03g09220 LOC_Os01g31690 LOC_Os02g38210 LOC_Os02g44310 LOC_Os01g58000 LOC_Os03g03720 LOC_Os03g08050 LOC_Os03g08020 LOC_Os03g08010 More.. |
| Downstream Genes | LOC_Os07g32880 LOC_Os05g48630 LOC_Os12g23630 LOC_Os10g21240 LOC_Os09g08880 LOC_Os04g16740 LOC_Os06g43850 LOC_Os09g08910 LOC_Os07g37240 LOC_Os03g48471 LOC_Os08g02630 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn01100 rn00680 rn00190 rn00195 |
| Metacyc Pathways | PWY-6126 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g17070.1 |
| Rice Genome Annotation | LOC_Os03g17070.1 |
| Ricechip | LOC_Os03g17070.1 |
| KEGG | osa:4332431 dosa:Os03t0278900-01 |
| Entrez-Gene | 4332431 |