RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g17084.1 View Network Show in Genome Browser |
| Other Names | Os03g0279000 |
| Description | Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 9492890-9497494 Nucleotide Length: 1254 |
| Protein-coding | LOC_Os03g17084 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g02780 LOC_Os02g45940 LOC_Os01g61920 LOC_Os01g64640 LOC_Os03g06670 LOC_Os01g62230 LOC_Os02g01560 LOC_Os01g25610 LOC_Os01g08970 LOC_Os01g05900 LOC_Os01g05630 More.. |
| Downstream Genes | LOC_Os10g39410 LOC_Os09g38020 LOC_Os09g26340 LOC_Os07g36500 LOC_Os05g39050 LOC_Os05g38740 LOC_Os04g49420 LOC_Os11g05730 LOC_Os06g06510 LOC_Os06g06460 LOC_Os05g36280 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2102-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g17084.1 |
| Rice Genome Annotation | LOC_Os03g17084.1 |
| Ricechip | LOC_Os03g17084.1 |
| KEGG | dosa:Os03t0279000-00 |
| Entrez-Gene | 9268536 |