RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g17180.1 View Network Show in Genome Browser |
| Other Names | Os03g0280000 |
| Description | ABC transporter, ATP-binding protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 9557459-9566526 Nucleotide Length: 4236 |
| Protein-coding | LOC_Os03g17180 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g05340 LOC_Os01g53600 LOC_Os02g45650 LOC_Os01g44130 LOC_Os02g07830 |
| Downstream Genes | LOC_Os07g01200 LOC_Os04g51380 LOC_Os05g48750 LOC_Os06g48640 LOC_Os09g15750 LOC_Os08g25200 LOC_Os08g25010 LOC_Os04g51820 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR531b |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g17180.1 |
| Rice Genome Annotation | LOC_Os03g17180.1 |
| Ricechip | LOC_Os03g17180.1 |
| KEGG | osa:4332438 dosa:Os03t0280000-01 |
| Entrez-Gene | 4332438 |