RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g17230.1 View Network Show in Genome Browser |
| Other Names | Os03g0280800 |
| Description | NAD dependent epimerase/dehydratase family domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 9600151-9603553 Nucleotide Length: 1260 |
| Protein-coding | LOC_Os03g17230 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005794 | Golgi apparatus | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g40030 LOC_Os02g57990 LOC_Os02g57180 LOC_Os03g07140 LOC_Os02g20850 LOC_Os01g42850 LOC_Os02g58730 LOC_Os01g52710 LOC_Os02g02840 LOC_Os02g50860 LOC_Os01g48440 More.. |
| Downstream Genes | LOC_Os03g55070 LOC_Os10g13810 LOC_Os04g01280 LOC_Os06g25439 LOC_Os12g25690 LOC_Os12g25700 LOC_Os04g49250 LOC_Os03g31210 LOC_Os03g40720 LOC_Os06g12790 LOC_Os08g20200 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00520 rn01100 rn00500 |
| Metacyc Pathways | PWY-2582 DTDPRHAMSYN-PWY PWY-4821 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g17230.1 |
| Rice Genome Annotation | LOC_Os03g17230.1 |
| Ricechip | LOC_Os03g17230.1 |
| KEGG | osa:4332441 dosa:Os03t0280800-01 |
| Entrez-Gene | 4332441 |