RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g17520.1 View Network Show in Genome Browser |
| Other Names | Os03g0283600 |
| Description | CDP-alcohol phosphatidyltransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 9733146-9737565 Nucleotide Length: 990 |
| Protein-coding | LOC_Os03g17520 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g03110 LOC_Os02g04740 LOC_Os02g47850 LOC_Os01g66500 LOC_Os03g03930 LOC_Os03g02100 |
| Downstream Genes | LOC_Os09g36800 LOC_Os03g19930 LOC_Os03g31690 LOC_Os09g29840 LOC_Os05g41800 LOC_Os12g37610 LOC_Os07g39690 LOC_Os05g01440 LOC_Os09g30418 LOC_Os09g30412 LOC_Os08g39140 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR444a-3p.2 osa-miR444d.2 osa-miR444e |
| Pathways | |
|---|---|
| KEGG Pathways | rn00564 rn01100 |
| Metacyc Pathways | PHOSLIPSYN2-PWY PHOSLIPSYN-PWY PWY-5269 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g17520.1 |
| Rice Genome Annotation | LOC_Os03g17520.1 |
| Ricechip | LOC_Os03g17520.1 |
| KEGG | osa:4332460 dosa:Os03t0283600-01 |
| Entrez-Gene | 4332460 |