RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g17690.1 View Network Show in Genome Browser |
| Other Names | Os03g0285700 |
| Description | OsAPx1 - Cytosolic Ascorbate Peroxidase encoding gene 1-8, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 9843327-9846747 Nucleotide Length: 753 |
| Protein-coding | LOC_Os03g17690 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g55740 LOC_Os02g33450 LOC_Os01g48420 LOC_Os02g56110 LOC_Os02g28810 LOC_Os01g53450 LOC_Os01g67040 LOC_Os02g53770 LOC_Os02g01160 LOC_Os01g70960 |
| Downstream Genes | LOC_Os05g34770 LOC_Os07g08840 LOC_Os03g58630 LOC_Os11g42160 LOC_Os06g07090 LOC_Os09g35790 LOC_Os08g43334 LOC_Os05g33390 LOC_Os04g52130 LOC_Os07g44430 LOC_Os05g23620 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00053 rn00480 |
| Metacyc Pathways | DETOX1-PWY PWY66-162 PWY-5461 PWY-2261 |
| Reference | |
|---|---|
| PubMed | 21203887 14644501 22196946 15685422 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g17690.1 |
| Rice Genome Annotation | LOC_Os03g17690.1 |
| Ricechip | LOC_Os03g17690.1 |
| KEGG | osa:4332474 dosa:Os03t0285700-01 |
| Entrez-Gene | 4332474 |