RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g17780.1 View Network Show in Genome Browser |
| Other Names | Os03g0286800 |
| Description | WD domain, G-beta repeat domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 9893421-9896633 Nucleotide Length: 1434 |
| Protein-coding | LOC_Os03g17780 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g41500 LOC_Os02g36940 LOC_Os02g49800 LOC_Os02g36950 LOC_Os01g56550 LOC_Os02g39830 LOC_Os01g26174 LOC_Os02g46080 LOC_Os03g07820 LOC_Os02g02600 LOC_Os01g71400 More.. |
| Downstream Genes | LOC_Os04g12580 LOC_Os10g02970 LOC_Os04g12560 LOC_Os06g09340 LOC_Os04g12540 LOC_Os04g12600 LOC_Os10g33420 LOC_Os09g37600 LOC_Os04g39930 LOC_Os03g29850 LOC_Os03g20949 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5501 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g17780.1 |
| Rice Genome Annotation | LOC_Os03g17780.1 |
| Ricechip | LOC_Os03g17780.1 |
| KEGG | osa:4332480 dosa:Os03t0286800-01 |
| Entrez-Gene | 4332480 |