RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g17980.1 View Network Show in Genome Browser |
| Other Names | Os03g0289100 |
| Description | CAMK_KIN1/SNF1/Nim1_like_AMPKh.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 10006387-10012024 Nucleotide Length: 1647 |
| Protein-coding | LOC_Os03g17980 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0009991 | response to extracellular stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g05630 LOC_Os02g15594 LOC_Os03g17700 LOC_Os02g55560 LOC_Os03g02680 LOC_Os01g72790 LOC_Os03g01850 LOC_Os03g07300 LOC_Os01g71230 LOC_Os02g08364 LOC_Os02g03060 More.. |
| Downstream Genes | LOC_Os03g63940 LOC_Os03g20340 LOC_Os07g32380 LOC_Os08g37800 LOC_Os06g33549 LOC_Os06g48300 LOC_Os07g48790 LOC_Os06g33530 LOC_Os04g56450 LOC_Os05g41220 LOC_Os04g37904 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5147 osa-miR1428e-3p osa-miR5158 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g17980.1 |
| Rice Genome Annotation | LOC_Os03g17980.1 |
| Ricechip | LOC_Os03g17980.1 |
| KEGG | osa:4332495 dosa:Os03t0289100-02 |
| Entrez-Gene | 4332495 |