RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g19480.1 View Network Show in Genome Browser |
| Other Names | Os03g0307800 |
| Description | SET domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 10952133-10959835 Nucleotide Length: 2688 |
| Protein-coding | LOC_Os03g19480 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0040029 | regulation of gene expression, epigenetic | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g47150 LOC_Os02g50100 LOC_Os01g74500 LOC_Os03g07260 LOC_Os02g03030 LOC_Os01g73460 LOC_Os02g03060 LOC_Os01g70020 LOC_Os03g02200 LOC_Os02g56130 LOC_Os01g74180 More.. |
| Downstream Genes | LOC_Os08g04270 LOC_Os05g46270 LOC_Os08g04290 LOC_Os06g38470 LOC_Os11g08660 LOC_Os07g32390 LOC_Os04g08034 LOC_Os12g13460 LOC_Os08g14660 LOC_Os08g10470 LOC_Os07g28840 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5788 osa-miR2275d |
| Reference | |
|---|---|
| PubMed | 14527713 19825651 18156295 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g19480.1 |
| Rice Genome Annotation | LOC_Os03g19480.1 |
| Ricechip | LOC_Os03g19480.1 |
| KEGG | osa:4332612 dosa:Os03t0307800-01 |
| Entrez-Gene | 4332612 |