RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g19510.1 View Network Show in Genome Browser |
| Other Names | Os03g0308100 |
| Description | OsClp4 - Putative Clp protease homologue, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 10966698-10969826 Nucleotide Length: 849 |
| Protein-coding | LOC_Os03g19510 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g35630 LOC_Os02g19150 LOC_Os01g66330 LOC_Os01g54040 LOC_Os03g19350 LOC_Os01g56350 LOC_Os01g59920 LOC_Os02g30150 LOC_Os01g52320 LOC_Os01g56680 LOC_Os02g06650 More.. |
| Downstream Genes | LOC_Os05g45750 LOC_Os06g20320 LOC_Os05g44590 LOC_Os12g32790 LOC_Os09g36300 LOC_Os07g48960 LOC_Os03g24844 LOC_Os03g24770 LOC_Os12g32710 LOC_Os11g01890 LOC_Os09g21460 More.. |
| Reference | |
|---|---|
| PubMed | 16367953 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g19510.1 |
| Rice Genome Annotation | LOC_Os03g19510.1 |
| Ricechip | LOC_Os03g19510.1 |
| KEGG | osa:4332615 dosa:Os03t0308100-01 |
| Entrez-Gene | 4332615 |