RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os03g19590.1 View Network Show in Genome Browser
Other Names	Os03g0309200
Description	phytochrome B, putative, expressed
Gene Attributes	Chromosome: Chr3 CDS Coordinates (5'-3'): 11020091-11028228 Nucleotide Length: 3516
Protein-coding	LOC_Os03g19590

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0016043	cellular component organization	Biological Process	IEA
GO:0019725	cellular homeostasis	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0006629	lipid metabolic	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0015979	photosynthesis	Biological Process	IEA
GO:0009791	post-embryonic development	Biological Process	IEA
GO:0006464	protein modification process	Biological Process	IEA
GO:0009628	response to abiotic stimulus	Biological Process	IEA
GO:0009719	response to endogenous stimulus	Biological Process	IEA
GO:0009605	response to external stimulus	Biological Process	IEA
GO:0006950	response to stress	Biological Process	IEA
GO:0007165	signal transduction	Biological Process	IEA
GO:0006810	transport	Biological Process	IEA
GO:0009606	tropism	Biological Process	IEA
GO:0016301	kinase activity	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0004872	receptor activity	Molecular Function	IEA
GO:0004871	signal transducer activity	Molecular Function	IEA
GO:0005634	nucleus	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os02g53140 LOC_Os02g41550 LOC_Os02g05700 LOC_Os01g49690 LOC_Os01g38530 LOC_Os01g69920
Downstream Genes	LOC_Os04g23890 LOC_Os12g37570 LOC_Os06g08450 LOC_Os04g08740 LOC_Os12g41650 LOC_Os12g40900 LOC_Os10g26670 LOC_Os06g47890 LOC_Os06g05060 LOC_Os05g11550 LOC_Os03g54084 More..

miRNA Regulations
miRNAs	osa-miR172d-5p

Reference
PubMed	22764280 16278346 22268451 21880933 20409004 22138855 21512732 19706555 21911595

Database Links
Gramene	LOC_Os03g19590.1
Rice Genome Annotation	LOC_Os03g19590.1
Ricechip	LOC_Os03g19590.1
KEGG	osa:4332623 dosa:Os03t0309200-01
Entrez-Gene	4332623