RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g19930.2 View Network Show in Genome Browser |
| Other Names | Os03g0313600 |
| Description | adenylosuccinate lyase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 11210759-11214946 Nucleotide Length: 930 |
| Protein-coding | LOC_Os03g19930 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g07850 LOC_Os03g19280 LOC_Os03g17520 LOC_Os01g66500 LOC_Os01g46610 LOC_Os01g14580 LOC_Os02g33420 LOC_Os02g47850 LOC_Os02g19450 LOC_Os03g03930 LOC_Os03g02100 More.. |
| Downstream Genes | LOC_Os03g21950 LOC_Os03g58920 LOC_Os04g43800 LOC_Os09g36800 LOC_Os03g31690 LOC_Os05g01440 LOC_Os11g03210 LOC_Os05g49760 LOC_Os12g37610 LOC_Os09g29840 LOC_Os07g39690 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1877 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00230 rn00250 rn01100 rn01110 |
| Metacyc Pathways | DENOVOPURINE2-PWY PWY-841 P121-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g19930.2 |
| Rice Genome Annotation | LOC_Os03g19930.2 |
| Ricechip | LOC_Os03g19930.2 |
| KEGG | osa:4332642 dosa:Os03t0313600-01 |
| Entrez-Gene | 4332642 |