RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g20460.1 View Network Show in Genome Browser |
| Other Names | Os03g0320900 |
| Description | guanylate kinase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 11595453-11599060 Nucleotide Length: 858 |
| Protein-coding | LOC_Os03g20460 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g49330 LOC_Os02g47120 LOC_Os03g18630 LOC_Os01g04490 LOC_Os02g56370 LOC_Os01g26210 LOC_Os01g36790 LOC_Os02g43870 LOC_Os01g04570 LOC_Os02g06930 LOC_Os02g41890 More.. |
| Downstream Genes | LOC_Os03g22160 LOC_Os06g09910 LOC_Os09g30100 LOC_Os07g42160 LOC_Os05g06940 LOC_Os09g32810 LOC_Os04g01320 LOC_Os09g38834 LOC_Os09g27050 LOC_Os08g10070 LOC_Os03g39860 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5158 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00230 rn01100 rn00240 |
| Metacyc Pathways | DENOVOPURINE2-PWY P1-PWY PWY-6125 PWY0-166 |
| Reference | |
|---|---|
| PubMed | 17727616 15356324 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g20460.1 |
| Rice Genome Annotation | LOC_Os03g20460.1 |
| Ricechip | LOC_Os03g20460.1 |
| KEGG | osa:4332674 dosa:Os03t0320900-01 |
| Entrez-Gene | 4332674 |