RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g20700.1 View Network Show in Genome Browser |
| Other Names | Os03g0323200 |
| Description | magnesium-chelatase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 11712169-11720131 Nucleotide Length: 4164 |
| Protein-coding | LOC_Os03g20700 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g10290 LOC_Os01g17170 LOC_Os03g03720 LOC_Os02g09150 LOC_Os02g49870 LOC_Os01g04730 LOC_Os01g61814 LOC_Os02g06640 LOC_Os03g03360 LOC_Os02g01150 LOC_Os01g31690 More.. |
| Downstream Genes | LOC_Os03g36540 LOC_Os03g59640 LOC_Os11g16550 LOC_Os08g02630 LOC_Os05g48630 LOC_Os03g21940 LOC_Os03g25960 LOC_Os07g37240 LOC_Os12g05430 LOC_Os07g28610 LOC_Os12g34890 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00860 rn01100 rn01110 |
| Metacyc Pathways | CHLOROPHYLL-SYN |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g20700.1 |
| Rice Genome Annotation | LOC_Os03g20700.1 |
| Ricechip | LOC_Os03g20700.1 |
| KEGG | osa:4332690 dosa:Os03t0323200-02 |
| Entrez-Gene | 4332690 |