RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g21560.1 View Network Show in Genome Browser |
| Other Names | Os03g0333400 |
| Description | photosystem II 11 kD protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 12320856-12321798 Nucleotide Length: 498 |
| Protein-coding | LOC_Os03g21560 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0015979 | photosynthesis | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g71190 LOC_Os02g22260 LOC_Os02g49870 LOC_Os03g10060 LOC_Os02g38210 LOC_Os01g59060 LOC_Os03g03720 LOC_Os01g69950 LOC_Os01g44210 LOC_Os03g14040 LOC_Os02g50860 More.. |
| Downstream Genes | LOC_Os03g39830 LOC_Os09g34140 LOC_Os06g49160 LOC_Os10g35810 LOC_Os05g41190 LOC_Os06g21210 LOC_Os03g34040 LOC_Os05g33280 LOC_Os03g55720 LOC_Os08g02630 LOC_Os05g41640 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2919 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g21560.1 |
| Rice Genome Annotation | LOC_Os03g21560.1 |
| Ricechip | LOC_Os03g21560.1 |
| KEGG | osa:4332745 dosa:Os03t0333400-01 |
| Entrez-Gene | 4332745 |