RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g21720.1 View Network Show in Genome Browser |
| Other Names | Os03g0335300 |
| Description | vacuolar-sorting receptor precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 12401938-12408473 Nucleotide Length: 1887 |
| Protein-coding | LOC_Os03g21720 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005794 | Golgi apparatus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g58730 LOC_Os02g20850 LOC_Os02g55970 LOC_Os02g02840 LOC_Os02g50860 LOC_Os01g56070 LOC_Os01g12900 LOC_Os02g07900 LOC_Os01g50010 LOC_Os03g16800 |
| Downstream Genes | LOC_Os12g43930 LOC_Os03g47500 LOC_Os06g07830 LOC_Os06g12790 LOC_Os05g43820 LOC_Os06g45050 LOC_Os05g47550 LOC_Os06g48630 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2866 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g21720.1 |
| Rice Genome Annotation | LOC_Os03g21720.1 |
| Ricechip | LOC_Os03g21720.1 |
| KEGG | osa:4332756 dosa:Os03t0335300-01 |
| Entrez-Gene | 4332756 |