RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g21900.1 View Network Show in Genome Browser |
| Other Names | Os03g0337600 |
| Description | uroporphyrinogen decarboxylase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 12529065-12532698 Nucleotide Length: 1173 |
| Protein-coding | LOC_Os03g21900 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g08380 LOC_Os01g53450 LOC_Os01g69950 LOC_Os01g18320 LOC_Os01g71190 LOC_Os03g21550 LOC_Os01g58220 LOC_Os01g48690 LOC_Os03g15870 LOC_Os01g02080 LOC_Os02g07230 More.. |
| Downstream Genes | LOC_Os12g34890 LOC_Os08g41990 LOC_Os04g38750 LOC_Os10g41150 LOC_Os04g41260 LOC_Os12g02380 LOC_Os03g56840 LOC_Os11g02450 LOC_Os03g36540 LOC_Os11g32320 LOC_Os05g41900 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00860 rn01100 rn01110 |
| Metacyc Pathways | CHLOROPHYLL-SYN HEMEBIOSYNTHESISII |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g21900.1 |
| Rice Genome Annotation | LOC_Os03g21900.1 |
| Ricechip | LOC_Os03g21900.1 |
| KEGG | osa:4332771 dosa:Os03t0337600-01 |
| Entrez-Gene | 4332771 |