RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g21980.2 View Network Show in Genome Browser |
| Other Names | Os03g0338600 |
| Description | tRNA pseudouridine synthase family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 12591671-12595636 Nucleotide Length: 1125 |
| Protein-coding | LOC_Os03g21980 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g54540 |
| Downstream Genes | LOC_Os12g09290 LOC_Os06g39700 LOC_Os03g55930 LOC_Os03g60100 LOC_Os09g07910 LOC_Os03g49710 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1861a osa-miR1861o |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g21980.2 |
| Rice Genome Annotation | LOC_Os03g21980.2 |
| Ricechip | LOC_Os03g21980.2 |
| KEGG | osa:4332779 dosa:Os03t0338600-01 |
| Entrez-Gene | 4332779 |