RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g21990.1 View Network Show in Genome Browser |
| Other Names | Os03g0339100 |
| Description | WD domain, G-beta repeat domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 12599467-12605800 Nucleotide Length: 1419 |
| Protein-coding | LOC_Os03g21990 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g52250 LOC_Os02g13990 LOC_Os02g39050 LOC_Os02g01740 LOC_Os01g40610 LOC_Os02g05310 LOC_Os02g04480 LOC_Os03g19960 LOC_Os03g15700 LOC_Os01g63890 LOC_Os02g58090 More.. |
| Downstream Genes | LOC_Os04g28090 LOC_Os05g22260 LOC_Os07g44970 LOC_Os06g33250 LOC_Os12g42140 LOC_Os05g07050 LOC_Os06g11420 LOC_Os05g24970 LOC_Os03g27970 LOC_Os12g15420 LOC_Os03g50850 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g21990.1 |
| Rice Genome Annotation | LOC_Os03g21990.1 |
| Ricechip | LOC_Os03g21990.1 |
| KEGG | osa:4332781 dosa:Os03t0339100-01 |
| Entrez-Gene | 4332781 |