RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g22690.1 View Network Show in Genome Browser |
| Other Names | Os03g0349000 |
| Description | nucleoporin interacting component, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 13100324-13109352 Nucleotide Length: 2613 |
| Protein-coding | LOC_Os03g22690 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005635 | nuclear envelope | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g10790 LOC_Os03g18180 LOC_Os01g54240 LOC_Os01g44394 LOC_Os01g10350 LOC_Os01g63780 LOC_Os02g04480 LOC_Os02g06370 LOC_Os01g10020 LOC_Os02g11830 LOC_Os01g07080 More.. |
| Downstream Genes | LOC_Os08g07960 LOC_Os11g42420 LOC_Os06g20090 LOC_Os12g06890 LOC_Os08g01054 LOC_Os07g46180 LOC_Os05g28290 LOC_Os03g46480 LOC_Os03g42220 LOC_Os12g38110 LOC_Os12g06870 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g22690.1 |
| Rice Genome Annotation | LOC_Os03g22690.1 |
| Ricechip | LOC_Os03g22690.1 |
| KEGG | osa:4332834 dosa:Os03t0349000-01 |
| Entrez-Gene | 4332834 |