RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g24040.1 View Network Show in Genome Browser |
| Other Names | Os03g0356414 |
| Description | seven in absentia protein family domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 13633729-13637491 Nucleotide Length: 906 |
| Protein-coding | LOC_Os03g24040 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g11580 LOC_Os02g49080 LOC_Os01g55270 LOC_Os01g66300 LOC_Os02g02990 LOC_Os02g15220 LOC_Os01g43580 LOC_Os03g03130 LOC_Os01g46926 LOC_Os02g16040 LOC_Os01g60410 More.. |
| Downstream Genes | LOC_Os11g14220 LOC_Os03g51600 LOC_Os05g38480 LOC_Os05g34670 LOC_Os07g38730 LOC_Os11g26910 LOC_Os09g36830 LOC_Os10g39120 LOC_Os07g22220 LOC_Os04g57220 LOC_Os06g30970 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5519 |
| Reference | |
|---|---|
| PubMed | 22067990 21719639 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g24040.1 |
| Rice Genome Annotation | LOC_Os03g24040.1 |
| Ricechip | LOC_Os03g24040.1 |
| KEGG | osa:9266295 dosa:Os03t0356414-01 |
| Entrez-Gene | 9266295 |