RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g24440.1 View Network Show in Genome Browser |
| Other Names | Os03g0358900 |
| Description | IPP transferase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 13922782-13923768 Nucleotide Length: 987 |
| Protein-coding | LOC_Os03g24440 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g72880 LOC_Os02g37920 LOC_Os02g39570 LOC_Os02g49980 LOC_Os02g30630 |
| Downstream Genes | LOC_Os11g38020 LOC_Os09g37930 LOC_Os03g51790 LOC_Os04g54380 LOC_Os12g31820 LOC_Os11g41160 LOC_Os04g31960 LOC_Os11g38030 LOC_Os11g14950 LOC_Os04g32010 LOC_Os06g51280 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00908 rn01100 rn01110 |
| Metacyc Pathways | PWY-2781 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g24440.1 |
| Rice Genome Annotation | LOC_Os03g24440.1 |
| Ricechip | LOC_Os03g24440.1 |
| KEGG | dosa:Os03t0358900-00 |