RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g25620.1 View Network Show in Genome Browser |
| Other Names | Os03g0372700 |
| Description | LTV1, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 14670776-14674980 Nucleotide Length: 1503 |
| Protein-coding | LOC_Os03g25620 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g22890 LOC_Os01g27730 LOC_Os02g39180 LOC_Os03g18830 LOC_Os03g02420 LOC_Os01g57910 LOC_Os02g42350 LOC_Os03g11380 LOC_Os02g32740 LOC_Os03g02030 LOC_Os01g33050 More.. |
| Downstream Genes | LOC_Os03g49210 LOC_Os07g16950 LOC_Os06g04600 LOC_Os06g09570 LOC_Os07g01920 LOC_Os11g19250 LOC_Os03g61560 LOC_Os03g58810 LOC_Os10g42320 LOC_Os07g41750 LOC_Os12g37630 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2101-5p osa-miR3979-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g25620.1 |
| Rice Genome Annotation | LOC_Os03g25620.1 |
| Ricechip | LOC_Os03g25620.1 |
| KEGG | osa:4332942 dosa:Os03t0372700-02 |
| Entrez-Gene | 4332942 |