RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g25940.1 View Network Show in Genome Browser |
| Other Names | Os03g0376100 |
| Description | cystathionine gamma-synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 14850286-14854494 Nucleotide Length: 1509 |
| Protein-coding | LOC_Os03g25940 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g07570 LOC_Os03g11660 LOC_Os02g50350 LOC_Os02g16630 |
| Downstream Genes | LOC_Os10g36760 LOC_Os03g54790 LOC_Os03g58320 LOC_Os03g58300 LOC_Os11g20790 LOC_Os06g46372 LOC_Os11g11050 LOC_Os03g58290 LOC_Os10g36780 LOC_Os12g09290 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00270 rn01100 rn01110 rn00450 rn00920 |
| Metacyc Pathways | HOMOSER-METSYN-PWY PWY-801 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g25940.1 |
| Rice Genome Annotation | LOC_Os03g25940.1 |
| Ricechip | LOC_Os03g25940.1 |
| KEGG | osa:4332956 dosa:Os03t0376100-01 |
| Entrez-Gene | 4332956 |