RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g26210.1 View Network Show in Genome Browser |
| Other Names | Os03g0379300 |
| Description | helix-loop-helix DNA-binding domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 15000062-15002205 Nucleotide Length: 825 |
| Protein-coding | LOC_Os03g26210 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0007154 | cell communication | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009991 | response to extracellular stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g46720 LOC_Os01g65110 |
| Downstream Genes | LOC_Os03g51530 LOC_Os07g15460 LOC_Os03g52680 LOC_Os03g32490 LOC_Os03g54000 LOC_Os12g18410 LOC_Os03g32499 LOC_Os03g31730 |
| Reference | |
|---|---|
| PubMed | 20699001 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g26210.1 |
| Rice Genome Annotation | LOC_Os03g26210.1 |
| Ricechip | LOC_Os03g26210.1 |
| KEGG | osa:4332972 dosa:Os03t0379300-01 |
| Entrez-Gene | 4332972 |