RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g26440.1 View Network Show in Genome Browser |
| Other Names | Os03g0381100 |
| Description | tRNA pseudouridine synthase family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 15106637-15113611 Nucleotide Length: 1236 |
| Protein-coding | LOC_Os03g26440 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g07080 LOC_Os02g16630 LOC_Os02g44810 LOC_Os03g22690 LOC_Os03g25450 LOC_Os01g54540 LOC_Os01g62244 LOC_Os03g22320 LOC_Os01g42640 LOC_Os03g14990 LOC_Os03g02030 More.. |
| Downstream Genes | LOC_Os06g45250 LOC_Os06g39700 LOC_Os03g60100 LOC_Os03g55930 LOC_Os03g49230 LOC_Os05g33230 LOC_Os07g08710 LOC_Os12g19549 LOC_Os07g46440 LOC_Os09g07910 LOC_Os05g13300 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g26440.1 |
| Rice Genome Annotation | LOC_Os03g26440.1 |
| Ricechip | LOC_Os03g26440.1 |
| KEGG | osa:4332977 dosa:Os03t0381100-00 |
| Entrez-Gene | 4332977 |