RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g27930.1 View Network Show in Genome Browser |
| Other Names | Os03g0396900 |
| Description | RNA cap guanine-N2 methyltransferase domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 16038993-16045538 Nucleotide Length: 2073 |
| Protein-coding | LOC_Os03g27930 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g31140 LOC_Os01g68760 LOC_Os01g25330 LOC_Os01g34780 LOC_Os01g07740 LOC_Os01g36860 LOC_Os01g49250 LOC_Os01g40660 LOC_Os02g56020 LOC_Os02g51490 LOC_Os01g65220 More.. |
| Downstream Genes | LOC_Os11g46240 LOC_Os10g34380 LOC_Os06g19470 LOC_Os09g03610 LOC_Os09g19560 LOC_Os04g25360 LOC_Os04g25990 LOC_Os07g23169 LOC_Os06g05900 LOC_Os10g10434 LOC_Os07g22600 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00380 rn00624 rn01120 rn00340 rn00350 rn00130 rn01100 rn01110 |
| Metacyc Pathways | PWY-4021 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g27930.1 |
| Rice Genome Annotation | LOC_Os03g27930.1 |
| Ricechip | LOC_Os03g27930.1 |
| KEGG | osa:4333042 dosa:Os03t0396900-02 |
| Entrez-Gene | 4333042 |