RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g28940.1 View Network Show in Genome Browser |
| Other Names | Os03g0402800 |
| Description | ZIM domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 16407670-16409542 Nucleotide Length: 687 |
| Protein-coding | LOC_Os03g28940 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g08330 LOC_Os01g06590 LOC_Os02g02000 |
| Downstream Genes | LOC_Os10g42430 LOC_Os06g48534 LOC_Os04g43680 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5795 osa-miR5077 |
| Reference | |
|---|---|
| PubMed | 19618278 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g28940.1 |
| Rice Genome Annotation | LOC_Os03g28940.1 |
| Ricechip | LOC_Os03g28940.1 |
| KEGG | osa:4333065 dosa:Os03t0402800-01 |
| Entrez-Gene | 4333065 |