RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g29170.2 View Network Show in Genome Browser |
| Other Names | Os03g0405000 |
| Description | sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 16571965-16577763 Nucleotide Length: 1425 |
| Protein-coding | LOC_Os03g29170 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g01920 LOC_Os01g04260 LOC_Os03g02710 LOC_Os02g32490 LOC_Os02g04710 LOC_Os01g11300 LOC_Os03g12900 LOC_Os01g73990 LOC_Os01g66180 LOC_Os01g11340 LOC_Os03g12910 More.. |
| Downstream Genes | LOC_Os07g10600 LOC_Os08g43170 LOC_Os05g34770 LOC_Os07g40580 LOC_Os12g32240 LOC_Os09g34960 LOC_Os07g02210 LOC_Os10g37420 LOC_Os03g55150 LOC_Os05g26660 LOC_Os09g07830 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g29170.2 |
| Rice Genome Annotation | LOC_Os03g29170.2 |
| Ricechip | LOC_Os03g29170.2 |
| KEGG | osa:4333071 dosa:Os03t0405000-01 |
| Entrez-Gene | 4333071 |