RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g29250.1 View Network Show in Genome Browser |
| Other Names | Os03g0406100 |
| Description | SPX domain-containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 16645316-16646422 Nucleotide Length: 744 |
| Protein-coding | LOC_Os03g29250 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007154 | cell communication | Biological Process | IEA | |
| GO:0009991 | response to extracellular stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g10780 LOC_Os01g40340 LOC_Os03g22890 LOC_Os02g31030 LOC_Os02g50370 LOC_Os01g65220 LOC_Os02g44810 LOC_Os03g16670 LOC_Os01g66520 LOC_Os03g05720 LOC_Os01g07730 More.. |
| Downstream Genes | LOC_Os06g29790 LOC_Os07g47590 LOC_Os03g44810 LOC_Os06g40120 LOC_Os03g61200 LOC_Os07g10350 LOC_Os05g01310 LOC_Os10g25110 LOC_Os11g19250 LOC_Os04g52200 LOC_Os08g25624 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2919 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g29250.1 |
| Rice Genome Annotation | LOC_Os03g29250.1 |
| Ricechip | LOC_Os03g29250.1 |
| KEGG | osa:4333078 dosa:Os03t0406100-01 |
| Entrez-Gene | 4333078 |