RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g29260.2 View Network Show in Genome Browser |
| Other Names | Os03g0406250,Os03g0406200 |
| Description | elongation factor protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 16654331-16658820 Nucleotide Length: 681 |
| Protein-coding | LOC_Os03g29260 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0008135 | translation factor activity, nucleic acid binding | Molecular Function | IEA | |
| GO:0008135 | translation factor activity, nucleic acid binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g22180 LOC_Os02g27760 LOC_Os03g18570 LOC_Os03g18580 LOC_Os02g47140 LOC_Os01g25610 LOC_Os03g14530 LOC_Os02g01560 LOC_Os01g64090 LOC_Os02g40880 LOC_Os03g21940 More.. |
| Downstream Genes | LOC_Os07g47780 LOC_Os05g06310 LOC_Os07g10720 LOC_Os08g44380 LOC_Os03g46490 LOC_Os07g01870 LOC_Os12g03090 LOC_Os11g03400 LOC_Os10g41470 LOC_Os08g44450 LOC_Os04g50990 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g29260.2 |
| Rice Genome Annotation | LOC_Os03g29260.2 |
| Ricechip | LOC_Os03g29260.2 |
| KEGG | osa:4333079 dosa:Os03t0406200-01 |
| Entrez-Gene | 9271159 |