RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g29350.1 View Network Show in Genome Browser |
| Other Names | Os03g0407000 |
| Description | von Willebrand factor type A domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 16695922-16704617 Nucleotide Length: 2256 |
| Protein-coding | LOC_Os03g29350 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g59110 LOC_Os01g53420 LOC_Os01g53380 LOC_Os01g53350 LOC_Os01g53370 LOC_Os03g20750 LOC_Os01g64660 LOC_Os01g53390 LOC_Os01g21380 LOC_Os02g07160 LOC_Os03g13240 More.. |
| Downstream Genes | LOC_Os10g40570 LOC_Os10g18530 LOC_Os09g34230 LOC_Os08g38160 LOC_Os07g13800 LOC_Os06g18790 LOC_Os05g42060 LOC_Os04g44354 LOC_Os03g60960 LOC_Os10g18480 LOC_Os10g18510 More.. |
| Pathways | |
|---|---|
| Metacyc Pathways | PWY-4021 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g29350.1 |
| Rice Genome Annotation | LOC_Os03g29350.1 |
| Ricechip | LOC_Os03g29350.1 |
| KEGG | osa:4333081 dosa:Os03t0407000-01 |
| Entrez-Gene | 4333081 |