RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g29810.1 View Network Show in Genome Browser |
| Other Names | Os03g0411500 |
| Description | OsClp6 - Putative Clp protease homologue, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 16994268-16997742 Nucleotide Length: 780 |
| Protein-coding | LOC_Os03g29810 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0015979 | photosynthesis | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g35630 LOC_Os02g19150 LOC_Os01g66330 LOC_Os01g54040 LOC_Os03g19350 LOC_Os02g30150 LOC_Os01g66980 LOC_Os01g18320 LOC_Os03g25960 LOC_Os01g52320 |
| Downstream Genes | LOC_Os05g45750 LOC_Os06g20320 LOC_Os05g44590 LOC_Os12g32790 LOC_Os09g36300 LOC_Os07g48960 LOC_Os12g32710 LOC_Os11g45780 LOC_Os04g56800 LOC_Os09g34000 LOC_Os12g30590 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g29810.1 |
| Rice Genome Annotation | LOC_Os03g29810.1 |
| Ricechip | LOC_Os03g29810.1 |
| KEGG | osa:4333096 dosa:Os03t0411500-01 |
| Entrez-Gene | 4333096 |