RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g29970.1 View Network Show in Genome Browser |
| Other Names | Os03g0413000 |
| Description | histone-like transcription factor and archaeal histone, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 17085388-17087382 Nucleotide Length: 678 |
| Protein-coding | LOC_Os03g29970 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g07450 LOC_Os03g07880 LOC_Os02g47150 LOC_Os03g14669 LOC_Os01g36570 LOC_Os03g29760 LOC_Os01g43580 LOC_Os02g53620 LOC_Os02g04490 LOC_Os03g20340 LOC_Os01g28540 More.. |
| Downstream Genes | LOC_Os09g30310 LOC_Os09g02810 LOC_Os06g45640 LOC_Os05g41450 LOC_Os08g33100 LOC_Os08g38780 LOC_Os07g36140 LOC_Os12g25120 LOC_Os07g36130 LOC_Os11g34200 LOC_Os08g09690 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR414 osa-miR2926 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g29970.1 |
| Rice Genome Annotation | LOC_Os03g29970.1 |
| Ricechip | LOC_Os03g29970.1 |
| KEGG | osa:4333105 dosa:Os03t0413000-01 |
| Entrez-Gene | 4333105 |