RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g30000.1 View Network Show in Genome Browser |
| Other Names | Os03g0413400 |
| Description | glycosyl transferase 8 domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 17109125-17113771 Nucleotide Length: 1626 |
| Protein-coding | LOC_Os03g30000 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g19970 LOC_Os02g22380 LOC_Os03g08600 LOC_Os02g41520 LOC_Os02g20850 LOC_Os01g42850 LOC_Os01g65780 LOC_Os02g35020 LOC_Os02g58730 LOC_Os02g02840 LOC_Os02g30840 More.. |
| Downstream Genes | LOC_Os04g43700 LOC_Os05g35200 LOC_Os05g26890 LOC_Os06g12790 LOC_Os08g13350 LOC_Os05g43820 LOC_Os05g32500 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2102-5p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00500 rn00520 rn01110 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g30000.1 |
| Rice Genome Annotation | LOC_Os03g30000.1 |
| Ricechip | LOC_Os03g30000.1 |
| KEGG | osa:4333107 dosa:Os03t0413400-01 |
| Entrez-Gene | 4333107 |