RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os03g32314.1 View Network Show in Genome Browser
Other Names	Os03g0438200,Os03g0438100
Description	allene oxide cyclase 4, chloroplast precursor, putative, expressed
Gene Attributes	Chromosome: Chr3 CDS Coordinates (5'-3'): 18485606-18488371 Nucleotide Length: 723
Protein-coding	LOC_Os03g32314

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0006629	lipid metabolic	Biological Process	IEA
GO:0006629	lipid metabolic	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0009628	response to abiotic stimulus	Biological Process	IEA
GO:0009628	response to abiotic stimulus	Biological Process	IEA
GO:0009607	response to biotic stimulus	Biological Process	IEA
GO:0009607	response to biotic stimulus	Biological Process	IEA
GO:0006950	response to stress	Biological Process	IEA
GO:0006950	response to stress	Biological Process	IEA
GO:0003824	catalytic activity	Molecular Function	IEA
GO:0003824	catalytic activity	Molecular Function	IEA
GO:0016020	membrane	Cellular Component	IEA
GO:0016020	membrane	Cellular Component	IEA
GO:0005886	plasma membrane	Cellular Component	IEA
GO:0005886	plasma membrane	Cellular Component	IEA
GO:0005773	vacuole	Cellular Component	IEA
GO:0005773	vacuole	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os01g72950 LOC_Os03g31490 LOC_Os03g02640 LOC_Os02g47650 LOC_Os01g48300 LOC_Os03g12030 LOC_Os03g04440 LOC_Os01g55110 LOC_Os03g22770
Downstream Genes	LOC_Os04g46280 LOC_Os04g33940 LOC_Os04g58620 LOC_Os09g37080 LOC_Os08g29780

Pathways
KEGG Pathways	rn00592 rn01100
Metacyc Pathways	PWY-735

Reference
PubMed	17022177

Database Links
Gramene	LOC_Os03g32314.1
Rice Genome Annotation	LOC_Os03g32314.1
Ricechip	LOC_Os03g32314.1
KEGG	osa:4333202 osa:4333201 dosa:Os03t0438200-01 dosa:Os03t0438100-01
Entrez-Gene	4333202 9268925