RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g36540.1 View Network Show in Genome Browser |
| Other Names | Os03g0563300 |
| Description | magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 20247674-20250146 Nucleotide Length: 1248 |
| Protein-coding | LOC_Os03g36540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g20700 LOC_Os02g38240 LOC_Os03g08790 LOC_Os03g03020 LOC_Os03g03360 LOC_Os03g14040 LOC_Os01g54540 LOC_Os01g69950 LOC_Os02g42380 LOC_Os02g15900 LOC_Os02g43600 More.. |
| Downstream Genes | LOC_Os03g55930 LOC_Os09g32988 LOC_Os07g46310 LOC_Os03g50810 LOC_Os04g44440 LOC_Os08g25900 LOC_Os12g02380 LOC_Os11g02450 LOC_Os09g26810 LOC_Os09g34140 LOC_Os06g45340 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00860 rn01100 rn01110 |
| Metacyc Pathways | CHLOROPHYLL-SYN |
| Reference | |
|---|---|
| PubMed | 16915519 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g36540.1 |
| Rice Genome Annotation | LOC_Os03g36540.1 |
| Ricechip | LOC_Os03g36540.1 |
| KEGG | osa:4333259 dosa:Os03t0563300-01 |
| Entrez-Gene | 4333259 |