RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g38980.2 View Network Show in Genome Browser |
| Other Names | Os03g0586800 |
| Description | tRNA synthetases class II domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 21665214-21673593 Nucleotide Length: 1788 |
| Protein-coding | LOC_Os03g38980 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g27520 LOC_Os03g22880 LOC_Os01g49290 LOC_Os01g19840 LOC_Os02g46130 LOC_Os01g59990 LOC_Os01g61814 LOC_Os01g10820 LOC_Os03g19300 LOC_Os01g62350 LOC_Os02g42230 More.. |
| Downstream Genes | LOC_Os08g10450 LOC_Os05g28750 LOC_Os04g51630 LOC_Os05g28280 LOC_Os06g43760 LOC_Os05g08990 LOC_Os12g35570 LOC_Os05g38520 LOC_Os11g39650 LOC_Os10g26050 LOC_Os09g31180 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR815a osa-miR815b osa-miR815c |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g38980.2 |
| Rice Genome Annotation | LOC_Os03g38980.2 |
| Ricechip | LOC_Os03g38980.2 |
| KEGG | osa:4333345 dosa:Os03t0586800-02 |
| Entrez-Gene | 4333345 |