RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g40550.1 View Network Show in Genome Browser |
| Other Names | Os03g0602600 |
| Description | kinase, pfkB family, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 22547513-22552046 Nucleotide Length: 1770 |
| Protein-coding | LOC_Os03g40550 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g06880 LOC_Os01g01620 LOC_Os01g47550 LOC_Os02g41590 LOC_Os01g08930 LOC_Os01g67570 LOC_Os02g33110 LOC_Os01g73580 LOC_Os02g01590 |
| Downstream Genes | LOC_Os03g52760 LOC_Os05g09370 LOC_Os12g37610 LOC_Os06g02380 LOC_Os04g51280 LOC_Os12g17910 LOC_Os06g33520 LOC_Os08g44530 LOC_Os04g33720 LOC_Os04g33740 LOC_Os09g08072 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2871a-3p osa-miR2871b |
| Pathways | |
|---|---|
| KEGG Pathways | rn00030 |
| Metacyc Pathways | RIBOKIN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g40550.1 |
| Rice Genome Annotation | LOC_Os03g40550.1 |
| Ricechip | LOC_Os03g40550.1 |
| KEGG | osa:4333402 dosa:Os03t0602600-01 |
| Entrez-Gene | 4333402 |