RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g40720.1 View Network Show in Genome Browser |
| Other Names | Os03g0604200 |
| Description | UDP-glucose 6-dehydrogenase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 22641452-22657252 Nucleotide Length: 1449 |
| Protein-coding | LOC_Os03g40720 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g40030 LOC_Os01g68940 LOC_Os01g68950 LOC_Os01g21320 LOC_Os01g62020 LOC_Os03g17230 LOC_Os03g16980 LOC_Os03g14540 LOC_Os02g54890 LOC_Os01g73790 |
| Downstream Genes | LOC_Os07g47700 LOC_Os09g32670 LOC_Os08g41440 LOC_Os05g29990 LOC_Os06g08810 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00040 rn00053 rn00500 rn00520 rn01100 rn01110 |
| Metacyc Pathways | PWY-3821 PWY-4821 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g40720.1 |
| Rice Genome Annotation | LOC_Os03g40720.1 |
| Ricechip | LOC_Os03g40720.1 |
| KEGG | osa:4333410 dosa:Os03t0604200-01 |
| Entrez-Gene | 4333410 |