RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g41390.1 View Network Show in Genome Browser |
| Other Names | Os03g0610400 |
| Description | ZOS3-15 - C2H2 zinc finger protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 23036228-23037437 Nucleotide Length: 717 |
| Protein-coding | LOC_Os03g41390 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g12850 LOC_Os03g29350 LOC_Os03g13240 LOC_Os03g13250 LOC_Os01g04950 LOC_Os03g13274 LOC_Os01g67630 LOC_Os03g04570 LOC_Os02g47090 LOC_Os02g46460 LOC_Os02g48570 More.. |
| Downstream Genes | LOC_Os11g37080 LOC_Os09g12800 LOC_Os07g19560 LOC_Os06g37000 LOC_Os03g51050 LOC_Os07g42280 LOC_Os07g01070 LOC_Os10g02240 LOC_Os10g02260 LOC_Os08g23120 LOC_Os10g22560 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g41390.1 |
| Rice Genome Annotation | LOC_Os03g41390.1 |
| Ricechip | LOC_Os03g41390.1 |
| KEGG | osa:4333432 dosa:Os03t0610400-01 |
| Entrez-Gene | 4333432 |