RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g42020.1 View Network Show in Genome Browser |
| Other Names | Os03g0616400 |
| Description | calcium-transporting ATPase, plasma membrane-type, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 23341805-23347331 Nucleotide Length: 3102 |
| Protein-coding | LOC_Os03g42020 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g71240 LOC_Os02g08010 LOC_Os03g10640 LOC_Os01g74180 LOC_Os03g20370 LOC_Os01g16240 LOC_Os03g17310 LOC_Os03g27960 LOC_Os01g17190 LOC_Os02g55880 LOC_Os03g27950 More.. |
| Downstream Genes | LOC_Os05g44310 LOC_Os08g18110 LOC_Os10g13810 LOC_Os12g04220 LOC_Os04g51610 LOC_Os11g04460 LOC_Os05g41580 LOC_Os12g39660 LOC_Os10g28240 LOC_Os08g40530 LOC_Os07g48780 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g42020.1 |
| Rice Genome Annotation | LOC_Os03g42020.1 |
| Ricechip | LOC_Os03g42020.1 |
| KEGG | osa:4333451 dosa:Os03t0616400-01 |
| Entrez-Gene | 4333451 |