RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g43420.1 View Network Show in Genome Browser |
| Other Names | Os03g0633900 |
| Description | single-stranded DNA-binding protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 24215221-24219448 Nucleotide Length: 936 |
| Protein-coding | LOC_Os03g43420 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g45530 LOC_Os02g49830 LOC_Os02g49820 LOC_Os01g59980 LOC_Os02g45520 LOC_Os02g16709 LOC_Os02g39970 LOC_Os01g08700 LOC_Os01g71720 LOC_Os03g02020 |
| Downstream Genes | LOC_Os05g43440 LOC_Os06g39906 LOC_Os08g09270 LOC_Os07g43570 LOC_Os06g04510 LOC_Os07g49460 LOC_Os07g43560 LOC_Os08g29110 LOC_Os04g48390 LOC_Os09g19560 LOC_Os06g03860 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g43420.1 |
| Rice Genome Annotation | LOC_Os03g43420.1 |
| Ricechip | LOC_Os03g43420.1 |
| KEGG | osa:4333513 dosa:Os03t0633900-01 |
| Entrez-Gene | 4333513 |