RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g43810.1 View Network Show in Genome Browser |
| Other Names | Os03g0639300 |
| Description | helix-loop-helix DNA-binding domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 24545115-24547175 Nucleotide Length: 1485 |
| Protein-coding | LOC_Os03g43810 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g19590 LOC_Os02g40510 LOC_Os03g16900 LOC_Os01g08020 LOC_Os03g07840 LOC_Os01g18080 LOC_Os01g49190 LOC_Os01g48680 LOC_Os01g16110 LOC_Os03g11230 LOC_Os01g74030 More.. |
| Downstream Genes | LOC_Os03g51030 LOC_Os06g09570 LOC_Os07g01920 LOC_Os03g45290 LOC_Os07g38360 LOC_Os05g34540 LOC_Os05g23860 LOC_Os07g16970 LOC_Os07g06820 LOC_Os11g43860 LOC_Os03g49220 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g43810.1 |
| Rice Genome Annotation | LOC_Os03g43810.1 |
| Ricechip | LOC_Os03g43810.1 |
| KEGG | osa:9270162 dosa:Os03t0639300-01 |
| Entrez-Gene | 9270162 |