RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g44300.2 View Network Show in Genome Browser |
| Other Names | Os03g0645100 |
| Description | transketolase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 24902822-24905494 Nucleotide Length: 924 |
| Protein-coding | LOC_Os03g44300 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g50620 LOC_Os02g01500 LOC_Os01g56310 LOC_Os01g56560 LOC_Os03g15950 LOC_Os02g45660 |
| Downstream Genes | LOC_Os04g02900 LOC_Os06g13720 LOC_Os08g33440 LOC_Os09g24320 LOC_Os12g08170 LOC_Os06g01630 LOC_Os07g22720 LOC_Os06g30460 LOC_Os06g04270 LOC_Os12g08260 LOC_Os05g43576 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00010 rn00020 rn00620 rn00650 rn01110 rn01120 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g44300.2 |
| Rice Genome Annotation | LOC_Os03g44300.2 |
| Ricechip | LOC_Os03g44300.2 |
| KEGG | osa:4333564 dosa:Os03t0645100-01 |
| Entrez-Gene | 4333564 |