RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g44484.1 View Network Show in Genome Browser |
| Other Names | Os03g0646800 |
| Description | DNA-directed RNA polymerase II subunit RPB2, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 25033523-25042109 Nucleotide Length: 1596 |
| Protein-coding | LOC_Os03g44484 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g59140 LOC_Os03g01230 LOC_Os01g73430 LOC_Os03g38960 LOC_Os02g02510 LOC_Os02g05880 LOC_Os02g53230 LOC_Os01g61814 LOC_Os01g56550 LOC_Os02g24614 LOC_Os01g47330 More.. |
| Downstream Genes | LOC_Os05g05860 LOC_Os09g02284 LOC_Os04g41490 LOC_Os07g27930 LOC_Os07g07610 LOC_Os12g37370 LOC_Os11g08940 LOC_Os05g33240 LOC_Os11g29190 LOC_Os12g01710 LOC_Os03g60400 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2877 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g44484.1 |
| Rice Genome Annotation | LOC_Os03g44484.1 |
| Ricechip | LOC_Os03g44484.1 |
| KEGG | osa:4333571 dosa:Os03t0646800-01 |
| Entrez-Gene | 4333571 |