RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g44540.1 View Network Show in Genome Browser |
| Other Names | Os03g0647600 |
| Description | nuclear transcription factor Y subunit, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 25069060-25074703 Nucleotide Length: 1065 |
| Protein-coding | LOC_Os03g44540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR169n osa-miR169o osa-miR169r-5p osa-miR169f.1 osa-miR169g osa-miR169h osa-miR169i-5p.1 osa-miR169j osa-miR169k osa-miR169l osa-miR169m osa-miR169a osa-miR3979-5p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00330 rn01100 |
| Metacyc Pathways | PROSYN-PWY PROLINE-SYN2-PWY CITRULBIO-PWY |
| Reference | |
|---|---|
| PubMed | 18193457 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g44540.1 |
| Rice Genome Annotation | LOC_Os03g44540.1 |
| Ricechip | LOC_Os03g44540.1 |
| KEGG | osa:4333575 dosa:Os03t0647600-01 |
| Entrez-Gene | 4333575 |