RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g45410.1 View Network Show in Genome Browser |
| Other Names | Os03g0657000 |
| Description | TATA-binding protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 25634799-25638310 Nucleotide Length: 687 |
| Protein-coding | LOC_Os03g45410 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g23630 LOC_Os01g63940 LOC_Os02g06592 LOC_Os01g73890 LOC_Os01g32750 LOC_Os02g34750 LOC_Os03g29470 LOC_Os01g48810 LOC_Os03g23950 LOC_Os01g43630 LOC_Os01g54550 More.. |
| Downstream Genes | LOC_Os05g23940 LOC_Os09g36440 LOC_Os06g44030 LOC_Os09g26180 LOC_Os05g01710 LOC_Os11g16540 LOC_Os08g42020 LOC_Os05g28010 LOC_Os10g25770 LOC_Os06g43790 LOC_Os05g43450 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5542 |
| Reference | |
|---|---|
| PubMed | 11971135 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g45410.1 |
| Rice Genome Annotation | LOC_Os03g45410.1 |
| Ricechip | LOC_Os03g45410.1 |
| KEGG | osa:4333619 dosa:Os03t0657000-01 |
| Entrez-Gene | 4333619 |