RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g46330.1 View Network Show in Genome Browser |
| Other Names | Os03g0666100 |
| Description | pattern formation protein EMB30, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 26202267-26208389 Nucleotide Length: 3528 |
| Protein-coding | LOC_Os03g46330 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0016049 | cell growth | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0030234 | enzyme regulator activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g59790 LOC_Os01g16030 LOC_Os03g45920 LOC_Os02g48620 LOC_Os01g17250 LOC_Os01g51380 LOC_Os01g59150 LOC_Os01g18050 LOC_Os02g07060 LOC_Os03g01530 LOC_Os02g05340 More.. |
| Downstream Genes | LOC_Os05g41060 LOC_Os03g59740 LOC_Os07g12200 LOC_Os07g12170 LOC_Os03g63680 LOC_Os06g49480 LOC_Os08g15040 LOC_Os12g25710 LOC_Os11g14220 LOC_Os11g04070 LOC_Os06g37180 More.. |
| Reference | |
|---|---|
| PubMed | 19546891 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g46330.1 |
| Rice Genome Annotation | LOC_Os03g46330.1 |
| Ricechip | LOC_Os03g46330.1 |
| KEGG | osa:4333660 dosa:Os03t0666100-00 |
| Entrez-Gene | 4333660 |