RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g47610.1 View Network Show in Genome Browser |
| Other Names | Os03g0679700 |
| Description | thiamine biosynthesis protein thiC, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 26952048-26959200 Nucleotide Length: 1920 |
| Protein-coding | LOC_Os03g47610 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0009605 | response to external stimulus | Biological Process | IEA | |
| GO:0009991 | response to extracellular stimulus | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g48300 LOC_Os02g44870 LOC_Os02g02320 LOC_Os03g31490 LOC_Os02g44500 LOC_Os03g22770 LOC_Os02g32460 LOC_Os01g12580 |
| Downstream Genes | LOC_Os07g41600 LOC_Os04g51330 LOC_Os08g42590 LOC_Os12g09000 LOC_Os05g51150 LOC_Os11g01510 LOC_Os12g01520 LOC_Os09g31170 LOC_Os05g49170 LOC_Os11g34460 LOC_Os08g13320 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g47610.1 |
| Rice Genome Annotation | LOC_Os03g47610.1 |
| Ricechip | LOC_Os03g47610.1 |
| KEGG | osa:4333719 dosa:Os03t0679700-01 |
| Entrez-Gene | 4333719 |